The CL!Psci Scientific Search Engine is a superfast and efficient, free Google-like software, designed to meet the specialized and intensive, web-based information need of the researcher scientist. * Customize a menu of your most commonly used scientific search engines * Right-click on a word or...
|License: Freeware||Size: 1.53 MB||Download (45): Cl!psci Download|
Perl Entrez Gene Parser project provides Perl parsers for NCBI's Entrez Gene based on regular expression, Parse::RecDescent, Parse::Yapp and Perl-byacc. Some can parse human genome annotations in minutes. Documentation and user guides are provided.
Platforms: Windows, Mac, Linux
|License: Freeware||Size: 35.3 KB||Download (28): Entrez Gene Parser in Perl Download|
This program is a parser that abstract a data structure from a given Entrez Gene record, and users of the parser can decide what to do/extract from the data structure. Perl Entrez Gene Parser project provides Perl parsers for NCBI's Entrez Gene based on regular expression, Parse::RecDescent,...
Platforms: Windows, Mac, *nix, Perl, BSD Solaris
|License: Freeware||Download (31): Perl Entrez Gene Parser Download|
The Entrez Widget provides a quick access to the NCBI Databases. You just have to enter your search terms and the result will be displayed in a new browser window.
|License: Freeware||Download (82): Entrez Widget Download|
|License: Freeware||Size: 1024 KB||Download (61): WinBlast Download|
Blast Viewer gives you a graphic interface to view reports produced by search systems in NCBI and EBI BLAST databases.Blast Viewer is a simple to use software designed for the daily analysis of biological sequences. It lets you view and analyze the enormous quantities of data that come from a...
|License: Freeware||Size: 5 KB||Download (257): Blast Viewer Download|
The BLAST widget provides a quick access to the Basic Local Alignment Search Tool at NCBI. You just have to type or paste your sequence and to select the program to be used.
|License: Freeware||Download (97): BLAST Widget Download|
Translated BLAST Widget provides a quick access to the Translated Basic Local Alignment Search Tool at NCBI. You just have to type or paste your sequence and to select the program to be used.
|License: Freeware||Download (71): Translated BLAST Widget Download|
Protein BLAST Widget provides a quick access to the Protein Basic Local Alignment Search Tool at NCBI. You just have to type or paste your sequence and to select the program to be used.
|License: Freeware||Download (80): Protein BLAST Widget Download|
Nucleotide BLAST Widget provides a quick access to the Nucleotide Basic Local Alignment Search Tool at NCBI. You just have to type or paste your sequence and to select the program to be used.
|License: Freeware||Download (91): Nucleotide BLAST Widget Download|
TB antibiotic resistance mapper was developed as a specialized tool that can help you map sequencing reads with the MTB reference genome (H37Rv) using NCBI blast, in order to find out mutation sites.
Now you can quickly discover mutations with the help of this instrument.
|License: Freeware||Download (40): TB antibiotic resistance mapper Download|
EST Express is an open-source, cross-platform web server application that imports sequences from cDNA libraries and provides several layers of annotation based on Entrez Gene to allow the user to highlight useful genes and manage cDNA library projects.
Platforms: Windows, Mac, Linux
|License: Freeware||Size: 27.32 MB||Download (28): EST Express Download|
JAMBLAST: Java Application Manager for the ncbi BLAST results. It is a graphic application that allow the user to display, filter, sort, import/export, store/manage BLAST results produced with the NOBLAST (https://sourceforge.net/projects/noblast).
Platforms: Windows, Mac, Linux
|License: Freeware||Size: 4.29 MB||Download (27): jamblast Download|
This software is to help the those connected with Biology,Biotechnology,Bio Informatics.The user can select from the choices of proteins, nucleotides,etc(All those found on NCBI's website)and search for the specific results
Platforms: Windows, Mac, BSD, Linux
|License: Freeware||Size: 10.56 KB||Download (27): NCBI Viewer Download|
ORFer reads the NCBI GenBank XML sequence format and extracts open reading frames for proteins. Sequences can be requested by GI or accession number. ORFprimer is an extended software package for high throughput PCR primer design for biological sequences
Platforms: Windows, Mac, BSD, Solaris, Linux
|License: Freeware||Size: 240.93 KB||Download (28): ORFprimer - primer design for ORFs Download|
MGWT: Identification of protein coding regions using the ModifiedGabor-wavelet transform.Sequence of test:F56F11.4.fasta (included into the zip file)http://www.ncbi.nlm.nih.gov/entrez/viewer....de&val=AF099922http://www.vision.ime.usp.br/~jmena/projec...ome_results/F5/References: J. P....
|License: Freeware||Size: 51.2 KB||Download (21): MGWT Download|
As part of implementation of CMS for Biomedical applications, it is often a requirement to display publications from well known databases. One such database is called PubMed which is provided National Center for Biotechnology Information, National Library of Medicine and National Institutes of...
|License: Freeware||Size: 20.48 KB||Download (19): Pubmed Integration Download|
Sequin is a stand-alone software tool developed by the NCBI for submitting and updating entries to the GenBank sequence database. It is capable of handling simple submissions that contain a single short mRNA sequence, and complex submissions containing long sequences, multiple annotations, gapped...
|License: Freeware||Size: 63.48 MB||Download (16): Sequin Download|
NCBI Genome Workbench is an integrated application for viewing and analyzing sequence data. With Genome Workbench, you can view data in publically available sequence databases at NCBI, and mix this data with your own private data. Genome Workbench can display sequence data in many ways,...
|License: Freeware||Size: 35.54 MB||Download (16): Genome Workbench Download|
NCBI recently started a biological image search feature (http://www.ncbi.nlm.nih.gov/images). This extension adds a figure summary in these figures. The summaries are derived from UWM's FigureSearch (http://figuresearch.askhermes.org). Note that the summary appears only for figures in open access...
|License: Freeware||Size: 71.68 KB||Download (16): figuresummarizer Download|